Jinfa Ying, Ph.D.
Staff Scientist:
Biophysical Nuclear Magnetic Resonance Spectroscopy Section, Laboratory of Chemical Physics
Scientific Focus Areas: Biomedical Engineering and Biophysics
Publications
A selection of recent and significant publications can be viewed below.
- Quantitative evaluation of positive ϕ angle propensity in flexible regions of proteins from three-bond J couplings.
- Lee JH, Ying J, Bax A.
- Phys Chem Chem Phys (2016 Feb 17) 18:5759-70. Abstract/Full Text
- High accuracy of Karplus equations for relating three-bond J couplings to protein backbone torsion angles.
- Li F, Lee JH, Grishaev A, Ying J, Bax A.
- Chemphyschem (2015 Feb 23) 16:572-8. Abstract/Full Text
- A maximum entropy approach to the study of residue-specific backbone angle distributions in α-synuclein, an intrinsically disordered protein.
- Mantsyzov AB, Maltsev AS, Ying J, Shen Y, Hummer G, Bax A.
- Protein Sci (2014 Sep) 23:1275-90. Abstract/Full Text
- Homonuclear decoupling for enhancing resolution and sensitivity in NOE and RDC measurements of peptides and proteins.
- Ying J, Roche J, Bax A.
- J Magn Reson (2014 Apr) 241:97-102. Abstract/Full Text
- Dissociation of the trimeric gp41 ectodomain at the lipid-water interface suggests an active role in HIV-1 Env-mediated membrane fusion.
- Roche J, Louis JM, Grishaev A, Ying J, Bax A.
- Proc Natl Acad Sci U S A (2014 Mar 4) 111:3425-30. Abstract/Full Text
- Deuterium isotope shifts for backbone ¹H, ¹⁵N and ¹³C nuclei in intrinsically disordered protein α-synuclein.
- Maltsev AS, Ying J, Bax A.
- J Biomol NMR (2012 Oct) 54:181-91. Abstract/Full Text
- Probing exchange kinetics and atomic resolution dynamics in high-molecular-weight complexes using dark-state exchange saturation transfer NMR spectroscopy.
- Fawzi NL, Ying J, Torchia DA, Clore GM.
- Nat Protoc (2012 Jul 19) 7:1523-33. Abstract/Full Text
- Measurement of ¹⁵N relaxation rates in perdeuterated proteins by TROSY-based methods.
- Lakomek NA, Ying J, Bax A.
- J Biomol NMR (2012 Jul) 53:209-21. Abstract/Full Text
- Impact of N-terminal acetylation of α-synuclein on its random coil and lipid binding properties.
- Maltsev AS, Ying J, Bax A.
- Biochemistry (2012 Jun 26) 51:5004-13. Abstract/Full Text
- Imino hydrogen positions in nucleic acids from density functional theory validated by NMR residual dipolar couplings.
- Grishaev A, Ying J, Bax A.
- J Am Chem Soc (2012 Apr 25) 134:6956-9. Abstract/Full Text
- Atomic-resolution dynamics on the surface of amyloid-β protofibrils probed by solution NMR.
- Fawzi NL, Ying J, Ghirlando R, Torchia DA, Clore GM.
- Nature (2011 Oct 30) 480:268-72. Abstract/Full Text
- Measurement of (1)H-(15)N and (1)H-(13)C residual dipolar couplings in nucleic acids from TROSY intensities.
- Ying J, Wang J, Grishaev A, Yu P, Wang YX, Bax A.
- J Biomol NMR (2011 Sep) 51:89-103. Abstract/Full Text
- Structural discrimination in small molecules by accurate measurement of long-range proton-carbon NMR residual dipolar couplings.
- Trigo-Mouriño P, Navarro-Vázquez A, Ying J, Gil RR, Bax A.
- Angew Chem Int Ed Engl (2011 Aug 8) 50:7576-80. Abstract/Full Text
- Kinetics of amyloid beta monomer-to-oligomer exchange by NMR relaxation.
- Fawzi NL, Ying J, Torchia DA, Clore GM.
- J Am Chem Soc (2010 Jul 28) 132:9948-51. Abstract/Full Text
- Chemical shift anisotropy of imino 15N nuclei in Watson-Crick base pairs from magic angle spinning liquid crystal NMR and nuclear spin relaxation.
- Grishaev A, Yao L, Ying J, Pardi A, Bax A.
- J Am Chem Soc (2009 Jul 15) 131:9490-1. Abstract/Full Text
- Improved accuracy of 15N-1H scalar and residual dipolar couplings from gradient-enhanced IPAP-HSQC experiments on protonated proteins.
- Yao L, Ying J, Bax A.
- J Biomol NMR (2009 Mar) 43:161-70. Abstract/Full Text
- NMR determination of amide N-H equilibrium bond length from concerted dipolar coupling measurements.
- Yao L, Vögeli B, Ying J, Bax A.
- J Am Chem Soc (2008 Dec 10) 130:16518-20. Abstract/Full Text
- Solution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS data.
- Grishaev A, Ying J, Canny MD, Pardi A, Bax A.
- J Biomol NMR (2008 Oct) 42:99-109. Abstract/Full Text
- Magnetic field induced residual dipolar couplings of imino groups in nucleic acids from measurements at a single magnetic field.
- Ying J, Grishaev A, Latham MP, Pardi A, Bax A.
- J Biomol NMR (2007 Oct) 39:91-6. Abstract/Full Text
- Limits on variations in protein backbone dynamics from precise measurements of scalar couplings.
- Vögeli B, Ying J, Grishaev A, Bax A.
- J Am Chem Soc (2007 Aug 1) 129:9377-85. Abstract/Full Text
- Mixed-time parallel evolution in multiple quantum NMR experiments: sensitivity and resolution enhancement in heteronuclear NMR.
- Ying J, Chill JH, Louis JM, Bax A.
- J Biomol NMR (2007 Mar) 37:195-204. Abstract/Full Text
- Design, synthesis, and biological evaluation of new cyclic melanotropin peptide analogues selective for the human melanocortin-4 receptor.
- Ying J, Gu X, Cai M, Dedek M, Vagner J, Trivedi DB, Hruby VJ.
- J Med Chem (2006 Nov 16) 49:6888-96. Abstract/Full Text
- 2'-hydroxyl proton positions in helical RNA from simultaneously measured heteronuclear scalar couplings and NOEs.
- Ying J, Bax A.
- J Am Chem Soc (2006 Jul 5) 128:8372-3. Abstract/Full Text
- Carbon-13 chemical shift anisotropy in DNA bases from field dependence of solution NMR relaxation rates.
- Ying J, Grishaev A, Bax A.
- Magn Reson Chem (2006 Mar) 44:302-10. Abstract/Full Text